Soon after the founding of Massachusetts, events there proved the folly of their false theology and the truth of accurate biblical and historical interpretation. As Isaac Backus reported, by 1660 or 1670 Puritan theologians and pastors in New England were pointing out the “general religious declension” that was already taking place as the first generation of settlers passed away. “Mr. Willard published a discourse in the year 1700 entitled, ‘The Perils of the Times Displayed,’ in which he said:
“That there is a form of godliness among us is manifest; but the great inquiry is, whether there be not too much of a general denying of the power of it. Whence else is it, that there be such things as these that follow, to be observed? that there is such a prevalency of so many immoralities among professors? that there is so little success of the gospel? How few thorough conversions [are] to be observed, how scarce and seldom…. It hath been a frequent observation that if one generation begins to decline, the next that follows usually grows worse, and so on, until God pours out his Spirit again upon them. The decays which we do already languish under are sad; and what tokens are on our children, that it is like to be better hereafter…. How do young professors grow weary of the strict profession of their fathers, and become strong disputants for the [those] things which their progenitors forsook a pleasant land for the avoidance of.
“And forty years after, Mr. Prince said, ‘We have been generally growing worse and worse ever since.’ The greatest evils that [the founders of New England] came here to avoid were the mixture of worthy and unworthy communicants in the churches, and the tyranny of secular and ministerial Courts over them; but these evils were now coming in like a flood upon New England.”
The Halfway Covenant, established by the Massachusetts synod in 1662, was witness to the spiritual decline of the Puritan Congregationalist church. This resulted in a large number of church members being baptized into the church without conversion. Any person who professed belief in the doctrines of Calvinism and who lived an upright, moral life was allowed to join the parish church and sign the covenant or membership contract. Such persons were only allowed halfway into the church—they could have their children baptized but they could not take communion or vote in church affairs. This was the method practiced in the church to which Isaac Backus’ parents belonged.
 Isaac Backus, A History of New England With Particular Reference to the Denomination of Christians called Baptists, Volume 1 (Eugene, Oregon: Wipf & Stock Publishers, Previously published by Backus Historical Society, 1871), pp. 457-464. Examples of what the religious leaders were saying are given in those pages.
Ibid., pp. 264-268; William L. Lumpkin, Baptist Foundations in the South (Eugene, Oregon: Wipf & Stock Publishers, 2006), pp. 1-2; William G. McLoughlin, Isaac Backus and the American Piestic Tradition (Boston: Little, Brown and Company, 1967), pp. 5-6.
Although they differed from the Church of England and others on some doctrines, “[t]he Puritans brought 2 principles with them from their native country, in which they did not differ from others; which are, that natural birth, and the doings of men, can bring children into the Covenant of Grace; and, that it is right to enforce & support their own sentiments about religion with the magistrate’s sword.”
John Cotton was called upon to arrange the civil and ecclesiastical affairs of the colony. They set up a ecclesiocracy in which no one could hold office who was not a member of an approved church. “The civil laws were adjusted to the polity of the church, and while nominally distinct, they supported and assisted each other.”
“‘It was requested of Mr. Cotton,’ says his descendant Cotton Mather, ‘that he would from the laws wherewith God governed his ancient people, form an abstract of such as were of a moral and lasting equity; which he performed as acceptably as judiciously…. He propounded unto them, an endeavour after a theocracy, as near as might be to that which was the glory of Israel, the peculiar people.’”
The goal of the Puritans was to build “city on a hill.” Two modern day Covenant Theologians and historical revisionists wrote:
“They determined to change their society in the only way that could make any lasting difference: by giving it a Christianity that worked. And this they set out to do, not by words but by example, in the one place where it was still possible to live the life to which Christ had called them: three thousand miles beyond the reach of the very Church they were seeking to purify.
“[T]he legacy of Puritan New England to this nation, which can still be found at the core of our American way of life, may be summed up in one word: covenant…. [O]n the night of the Last Supper, to those who were closest to Him, Jesus said, “This is my blood of the new covenant, which is poured out for many for forgiveness of sins….”
To the contrary, covenant cannot be found, as understood by the Puritan theologians, now or anytime in the past, at the core of our American way of life. The idea of covenant at the core of our American way of life was that of the Baptists as expressed by the Warren Association at the close of the War for Independence:
“The American Revolution is wholly built upon the doctrine, that all men are born with an equal right to what Providence gives them, and that all righteous government is founded in compact or covenant, which is equally binding upon the officers and members of each community…. And as surely as Christianity is true, Christ is the only lawgiver and head of his church….”
Nor is there a Bible principle that allows a nation to covenant with God contrary to the principles laid down in God’s Word. The Puritans incorrectly believed that every nation is in covenant with the Lord to enforce both His spiritual and earthly principles. They misunderstood the biblical teachings that God gives every nation a choice as to whether to follow His rules, and that nowhere in Scripture is there authority for a nation to initiate a non-biblical covenant with God. God alone initiated the Old Testament covenants to which He was a party, thereby, among other things, establishing Israel as a theocracy, and He made no such covenant with any other nation. All other nations called Gentile, and are judged by God primarily based upon their treatment of Israel.
Covenant Theology asserts that there are only two covenants, or three, in the Bible, with the other covenants which came after the Covenant of Grace being only a continuation thereof. The Covenant of Law, according to the covenant theologian, was made in the Garden of Eden. Covenant Theology superimposes the New Testament over the Old. Herein lies some of the fatal flaws in this interpretation of the Bible. In the Puritan formulation of those covenants, the principles and practices of the nation Israel and the Jewish religion were applied to the church and state. As has been shown, this presents irreconcilable conflicts with Old and New Testament teachings concerning law and grace and the relationship of church and state.
God permits a mutual compact or covenant between a ruler or the rulers and the people—a covenant that does not include God and His principles and that is not initiated or ordained by God. God allowed even the people of the theocracy of Israel to reject Him and, like the Gentile nations, to have a king. Isaac Backus taught as follows:
“Now the word of God plainly shows, that this way of mutual compact or covenant, is the only righteous foundation for civil government. For when Israel must needs have a king like the rest of the nations, and he indulged them in that request, yet neither Saul nor David, who were anointed by his immediate direction, ever assumed the regal power over the people, but by their free consent. And though the family of David had the clearest claim to hereditary succession that any family on earth ever had, yet, when ten of the twelve tribes revolted from his grandson, because he refused to comply with what they esteemed a reasonable proposal, and he had collected an army to bring them back by force, God warned him not to do it, and he obeyed him therein. Had these plain precedents been regarded in later times, what woes and miseries would they have prevented? But the history of all ages and nations shows, that when men have got the power into their hands, they often use it to gratify their own lusts, and recur to nature, religion or the constitution (as they think it will best serve) to carry, and yet cover, their wretched designs.”
The Puritan ideal is disproved by correct interpretation of the Word of God, by biblical history and prophecy, and secular history, including the history of the colony of Massachusetts. Israel, populated by God’s chosen race, was directly under God, yet the Israelites rejected His theocracy so that they could have a king like all the other nations. Israel fared ill when they did things their way and were ruled by kings. Under both God and king, Israel refused to do things God’s way, and rejected his commandments and statutes. After the death of King Solomon, the nation divided in two. All of the kings of the northern kingdom, Israel, were bad. The southern Kingdom, Judah, had twenty kings—eight were good and twelve were bad. Both Israel and Judah, in accord with God’s philosophy of history, experienced religious apostasy, moral awfulness, and political anarchy. They failed to keep the commandments and statutes of God and were taken into captivity as a result.
The Puritans failed to correctly interpret both the Old and New Testaments and secular history which clearly show that all nations that have ever existed have been judged by God, are in the process of being judged by God, or will be judged by God. They misinterpreted prophecy concerning the end times to say that the church, working hand in hand with the state will establish the kingdom of heaven on earth. Oh, had and would they (have) realize(d) that the New Covenant for the church had so much better promises and procedures than the Old Testament covenants. “But now hath he [Jesus Christ] obtained a more excellent ministry, by how much also he is the mediator of a better covenant, which was established upon better promises.”
The Puritans wrongly, but truly, believed they could build the Kingdom of God on earth, in their lifetime—all they needed, they felt, was “the right time, the right place, and the right people” who “were willing to commit themselves totally.” The Puritans did not realize that the philosophy of history in the Bible and the basic nature of man rendered their goal impossible. God describes the cycle of every civil government, Jewish and Gentile.
“The book of Judges is a philosophy of history. ‘Righteousness exalteth a nation; but sin is a reproach to any people’ (Proverbs 14.34).”
“We see that philosophy in the book of Judges. Israel at first, for a short time, served God. Then they did evil in the sight of the Lord and served Baal and Ashtaroth. The anger of the Lord was hot against Israel, and He delivered them into the hands of their enemies. Israel then entered into a time of servitude. Israel cried out to God in their plight and distress. They turned to God and repented. God heard their prayers and raised up judges through whom they were delivered.
“This cycle was repeated over and over. The book of Isaiah opens with God giving his philosophy of history. Isaiah outlines three steps that cause the downfall of a nation: (1) spiritual apostasy, (2) moral awfulness, (3) and political anarchy.”
“Every nation goes down in this order: (1) religious apostasy; (2) moral awfulness; (3) political anarchy. Deterioration begins in the [church], then to the home, and finally to the state. That is the way a nation falls.”
“In Judges 17-21, we have presented that philosophy of history [that was mentioned above]. In Judges 17-18, we see spiritual apostasy. In Judges 19, we see moral awfulness. In Judges 20-21, we see political anarchy. This period ends in total national corruption and confusion. ‘In those days there was no king in Israel; every man did that which was right in his own eyes. (Judges 21.25).’
“If you want to know just how up-to-date the book of Judges is, listen to the words of the late General Douglas McArthur: ‘In this day of gathering storms, as moral deterioration of political power spreads its growing infection, it is essential that every spiritual force be mobilized to defend and preserve the religious base upon which this nation is founded; for it has been that base which has been the motivating impulse to our moral and national growth. History fails to record a single precedent in which nations subject to moral decay have not passed into political and economic decline. There has been either a spiritual reawakening to overcome the moral lapse, or a progressive deterioration leading to ultimate national disaster.’”
The Puritans felt that they were dedicated to serving the Lord and to doing things His way. They believed that they could set up a civil government modeled after biblical principles. They did not realize that even had they been upright in God’s eyes, future leaders would depart from the faith and lead the church and the civil government downhill into depravity just as happened in Israel and in all church-state marriages starting with the Catholics and up to the established churches after the Reformation, including the Church of England from which they were fleeing.
 Isaac Backus, A History of New England With Particular Reference to the Denomination of Christians called Baptists, Volume 1 (Eugene, Oregon: Wipf & Stock Publishers, Previously published by Backus Historical Society, 1871), pp. 34-35.
 Roger Williams and Edward Bean Underhill, The Bloudy Tenent of Persecution for Cause of Conscience Discussed and Mr. Cotton’s Letter Examined and Answered (London: Printed for the Society, by J. Haddon, Castle Street, Finsbury, 1848), p. xii.
 Backus, p. 35; Williams and Underhill, pp. x-xi.
Ibid., footnote 8, pp. xii-xiii, citing sources.
 Peter Marshall and David Manuel, The Light and the Glory, (Old Tappan, New Jersey: Fleming H. Revell Company, 1977), p. 146.
 Isaac Backus, A History of New England With Particular Reference to the Denomination of Christians called Baptists, Volume 2 (Eugene, Oregon: Wipf & Stock Publishers, Previously published by Backus Historical Society, 1871), pp. 265-266.
The Puritans, unlike the Pilgrims who wanted to separate from the Church of England, wanted to purify the Church from within. “The State, in their view, had the duty to maintain the true Church; but the State was in every way subordinate to the Church.”
King James I was far more belligerently opposed to the Calvinistic church-state than even Queen Elizabeth had been, and his “determination toward the Puritans was to make them conform or to harry them out of the land.” The Puritans who suffered under the combined pressure of accelerated persecution and the advanced moral decay in their society began to flee England for the new world. “There was no ground at all left them to hope for any condescension or indulgence to their scruples, but uniformity was pressed with harder measures than ever.”
Cheating, double-dealing, the betrayal of one’s word were all part of the game for London’s financial district. Mercantile power brokers loved, honored, and worshipped money, and accumulated as much of it as possible and as fast as possible. The ends justified the means. “London was an accurate spiritual barometer for the rest of the country, for England had become a nation without a soul.” England was morally awful, and this came about under the auspices of a state-church practicing its theology. 1628 marked the beginning of the Great Migration that lasted sixteen years in which twenty thousand Puritans embarked for New England and forty-five thousand other Englishmen headed for Virginia, the West Indies, and points south.
A young Puritan minister named John Cotton preached a farewell sermon to the departing Puritans:
“He preached on 2 Samuel 7.10 (KJV): ‘Moreover, I will appoint a place for my people Israel, and will plant them, that they may dwell in a place of their own and move no more; neither shall the children of wickedness afflict them any more, as beforetime.’
“‘Go forth,’ Cotton exhorted, ‘… With a public spirit,’ with that ‘care of universal helpfulness…. Have a tender care … to your children, that they do not degenerate as the Israelites did….’
“Samuel Eliot Morison put it thus: ‘Cotton’s sermon was of a nature to inspire these new children of Israel with the belief that they were the Lord’s chosen people; destined, if they kept the covenant with Him, to people and fructify this new Canaan in the western wilderness.’”
The Puritans landed at Salem at the end of June, 1629. They were motivated by religious principles and purposes, seeking a home and a refuge from religious persecution. Having suffered long for conscience sake, they came for religious freedom, for themselves only. “They believed [in] the doctrine of John Calvin, with some important modifications, in the church-state ruled on theocratic principles, and in full government regulation of economic life.” The Puritan churches “secretly call[ed] their mother a whore, not daring in America to join with their own mother’s children, though unexcommunicate: no, nor permit[ed] them to worship God after their consciences, and as their mother hath taught them this secretly and silently, they have a mind to do, which publicly they would seem to disclaim, and profess against.” In 1630, 1500 more persons arrived, several new settlements were formed, and the seat of government was fixed at Boston. Thinking not of toleration of others,” they were prepared to practice over other consciences the like tyranny to that from which they had fled.”
 Roger Williams and Edward Bean Underhill, The Bloudy Tenent of Persecution for Cause of Conscience Discussed and Mr. Cotton’s Letter Examined and Answered (London: Printed for the Society, by J. Haddon, Castle Street, Finsbury, 1848), p. v.
The original settlers of Massachusetts were the Pilgrims who landed at what was to become Plymouth, Massachusetts in 1620. The Pilgrims were Separatists in England who had left the Church of England in the autumn of 1608 and formed their own church. They were considered dangerous radicals by the Bishops of the Church of England. “They believed that the Reformation had not gone far enough, that the Reformers had assumed an infallibility no more palatable when lodged in a ruler than when lodged in the Pope, that the Church of England had rejected the Pope but not Popery, that the bishops of the Church of England had no more authority than the bishops of the Church of Rome.”
Under James I, the Bishops were given a free hand to suppress the less than a thousand Separatists before they got out of hand. Calvinist historical revisionists Peter Marshall and David Manuel, who approved of the persecutions of the dissenters by the Puritan established churches in the colonies, complained that these were “dedicated followers of the Lord” who were:
“hounded, bullied, forced to pay assessments to the Church of England, clapped into prison on trumped-up charges, and driven underground. They met in private homes, to which they came at staggered intervals and by different routes, because they were constantly being spied upon. In the little Midlands town of Scrooby, persecution finally reached the point where the congregation to which William Bradford belonged elected to follow those other Separatists who had already sought religious asylum in Holland.”
As a result of the persecution in England, some Separatists went elsewhere, going first to Leyden, Holland. After over ten years of a hard life in Holland, they decided to try to go to America. They reached an agreement with an English merchant named Thomas Weston under which they were able to set sail. They could not obtain assurance of liberty of their consciences. “However, they determined at length to remove, depending on some general promises of connivance, if they behaved themselves peaceably, and hoping that the distance and remoteness of the place, as well as the public service they should do the King and Kingdom, would prevent their being disturbed.” One hundred and one Pilgrim souls sailed from Plymouth, England, on September 6, 1620, arriving at Cape Cod on November 11, 1620, and at a place they named Plymouth, in December, 1620. Upon arrival, they drafted the Mayflower Compact:
“In the name of God, amen. We whose names are under-written, the loyall subjects of our dread Soveraigne Lord King James by ye Grace of God of Great Britain, France, Ireland king, defender of the Faith, etc., having undertaken, for ye glorie of God, and advancemente of ye Christian faith and honour of our king & countrie, a voyage to plant ye first colonie in ye Northerne parts of Virginia, doe by these presents solemnly and mutually in ye presence of God, and one of another, covenant and combine our selves together into a civill body politick, for our better ordering & preservation & furtherance of the ends aforesaid; and by vertue hereof to enacte, constitute, and frame such just and equall lawes, ordinances, acts, constitutions and offices, from time to time, as shall be thought most meete & convenient for the generall good of ye colony, unto which we promise all due submission and obedience. In witness whereof we have hereunder subscribed our names at Cap-Codd, ye 11. of November, in ye year of ye raigne of our soveraigne lord, King James of England, France, & Ireland, ye eighteenth, and by Scotland ye fiftie fourth. Ano: Dom. 1620.”
As a matter of human compassion, the Pilgrims were hospitable to all; and, at first, grudgingly tolerated those of other creeds. However, they gradually began to close their doors to those of other creeds. “Plymouth was a Church-State ruled by a governor and a small and highly select theological aristocracy, a Church-State with various grades of citizenship and non-citizenship.” By 1651 the government of Plymouth colony was enforcing the laws of Congregationalist Massachusetts. “By the time Plymouth was united with Massachusetts in 1691 all major differences between the two had disappeared.”
The Pilgrims overcame much adversity, such as hunger, drought, and heat which caused their corn to wither, and the failure of delivery of much needed supplies from England. They increased to three hundred souls and obtained a patent from the New England Company on January 13, 1630. The comparative handful of Pilgrims who were eventually absorbed by the Puritans are much admired by Americans.
 William H. Marnell, The First Amendment: Religious Freedom in America from Colonial Days to the School Prayer Controversy (Garden City, New York: Doubleday & Company, Inc., 1964), p. 44.
 Peter Marshall and David Manuel, The Light and the Glory, (Old Tappan, New Jersey: Fleming H. Revell Company, 1977), pp. 108-109.
 John Callender, The Civil and Religious Affairs of the Colony of Rhode-Island (Providence: Knowles, Vose & Company, 1838), p. 64.
 Isaac Backus, A History of New England With Particular Reference to the Denomination of Christians called Baptists, Volume 1 (Eugene, Oregon: Wipf & Stock Publishers, Previously published by Backus Historical Society, 1871), pp. 27-28.
Jesus said, “They shall put you out of the synagogues: yea, the time cometh, that whosoever killeth you will think that he doeth God service.” In fulfillment of prophecies of the Lord, the established churches thought they were doing God’s will. And these things will they do unto you, because they have not known the Father, nor me.” The Old World patterns of church-state union and religious oppression were transplanted to the New World with all their rigor. Eleven of the original thirteen colonies established a church prior to the Revolution. One of those eleven was Massachusetts which was founded by Puritans who were Congregationalists. All New England colonies, except Rhode Island, had established churches based upon the same theology. As noted by the Rhode Island Baptist, John Callender, in the early nineteenth century:
“[The Puritans] were not the only people who thought they were doing God good service when smiting their brethren and fellow-servants. All other Christian sects generally, as if they thought this was the very best way to promote the gospel of peace, and prove themselves the true and genuine disciples of Jesus Christ—‘sic,’ who hath declared, his kingdom was not of this world, who had commanded his disciples to call no man master on earth, who had forbidden them to exercise lordship over each other’s consciences, who had required them to let the tares grow with the wheat till the harvest, and who had, in fine, given mutual love, peace, long-suffering, and kindness, as the badge and mark of his religion.”
The fight for religious liberty started in the New England colonies and then spread throughout the other colonies. The seventeenth century ended with firmly established church-states in all New England colonies except Rhode Island. The ecclesiocracies there were as absolute as the world has known, with persecution of “heretics;” but, because of intervention by England, not as brutal as past ecclesiocracies in Europe.
The Church of England was established in the southern colonies. In the Southern colonies, “the church enjoyed the favor of the colonial governors but it lacked the one pearl without price which the Congregational Church had. No Anglican ever left England to secure freedom of worship; no Virginia Episcopalian had the fervent motivation of a Massachusetts Puritan. In Massachusetts the church was the state. In Virginia and, to a lesser degree, in the rest of the South the Church was formally part of the State although hardly a part that loomed large in southern minds” (Marnell, pp. 63-64).
The theology of the established churches in Massachusetts, Connecticut, and New Hampshire led to a combining of church and state; infant baptism; taxing for payment of clergy, church charities, and other church expenses; persecution of dissenters such as Baptists; and many other unscriptural practices. Persecution of dissenters follows the example of the theocracy in Israel where, for example, Moses killed the three thousand who turned from the Lord into idolatry and immorality while he was on the mountain receiving the Ten Commandments, and Elijah had the four hundred and fifty false prophets of Baal killed.
 See, e.g., Leo Pfeffer, Church, State, and Freedom (Boston: The Beacon Press, 1953), p. 63.
  John Callender, The Civil and Religious Affairs of the Colony of Rhode-Island (Providence: Knowles, Vose & Company, 1838), p. 71
 William L. Lumpkin, Baptist Foundations in the South (Eugene, Oregon: Wipf & Stock Publishers, 2006), p. 1; Edmund S. Morgan, The Puritan Dilemma: The Story of John Winthrop (Boston, Mass., Toronto, Canada: Little, Brown and Company, 1958.
Churches under Christ Ministry of Charity Baptist Tabernacle of Amarillo, Texas. A Christian Lawyer explains how a church in America can remain under the Lord Jesus Christ and Him only. "And hath put all things under his feet, and gave him to be the head over all things to the church" (Ephesians 1.22).